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    13737ad9
    Convert 'map' table to 'Mapping' and use NCBI for updates. · 13737ad9
    Vermaat authored
    Convert the 'hg18.map' and 'hg19.map' tables are to 'hg18.Mapping' and
    'hg19.Mapping'. These tables are now updated with mapping info from the
    NCBI instead of the UCSC.
    
    Also added database and configuration file migration scripts.
    
    extras/config.example:
    - Remove configuration values for UCSC updates.
    
    extras/post-install.sh:
    mutalyzer/Mapper.py:
    mutalyzer/Db.py:
    - Use 'Mapping' table instead of 'map' table.
    
    extras/cron.d/mutalyzer-mapping-update:
    mutalyzer/Mapper.py:
    mutalyzer/Db.py:
    - Get mapping updates from the NCBI.
    
    extras/migrations:
    extras/post-upgrade.sh:
    - Automated migration scripts.
    
    
    
    git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/refactor-mutalyzer-branch@342 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
    13737ad9
    History
    Convert 'map' table to 'Mapping' and use NCBI for updates.
    Vermaat authored
    Convert the 'hg18.map' and 'hg19.map' tables are to 'hg18.Mapping' and
    'hg19.Mapping'. These tables are now updated with mapping info from the
    NCBI instead of the UCSC.
    
    Also added database and configuration file migration scripts.
    
    extras/config.example:
    - Remove configuration values for UCSC updates.
    
    extras/post-install.sh:
    mutalyzer/Mapper.py:
    mutalyzer/Db.py:
    - Use 'Mapping' table instead of 'map' table.
    
    extras/cron.d/mutalyzer-mapping-update:
    mutalyzer/Mapper.py:
    mutalyzer/Db.py:
    - Get mapping updates from the NCBI.
    
    extras/migrations:
    extras/post-upgrade.sh:
    - Automated migration scripts.
    
    
    
    git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/refactor-mutalyzer-branch@342 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
test_mapping.py 1.48 KiB