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bamstats Loading commit data...
flagstat Loading commit data...
vcfstats Loading commit data...
AnnotateVcfWithBed.scala Loading commit data...
BaseCounter.scala Loading commit data...
BastyGenerateFasta.scala Loading commit data...
BedToInterval.scala Loading commit data...
BedtoolsCoverageToCounts.scala Loading commit data...
CheckAllelesVcfInBam.scala Loading commit data...
DownloadNcbiAssembly.scala Loading commit data...
ExtractAlignedFastq.scala Loading commit data...
FastqFilter.scala Loading commit data...
FastqSplitter.scala Loading commit data...
FastqSync.scala Loading commit data...
FindOverlapMatch.scala Loading commit data...
FindRepeatsPacBio.scala Loading commit data...
GensToVcf.scala Loading commit data...
GvcfToBed.scala Loading commit data...
KrakenReportToJson.scala Loading commit data...
MergeAlleles.scala Loading commit data...
MergeOtuMaps.scala Loading commit data...
MergeTables.scala Loading commit data...
MpileupToVcf.scala Loading commit data...
PrefixFastq.scala Loading commit data...
RegionAfCount.scala Loading commit data...
SageCountFastq.scala Loading commit data...
SageCreateLibrary.scala Loading commit data...
SageCreateTagCounts.scala Loading commit data...
SamplesTsvToConfig.scala Loading commit data...
SeqStat.scala Loading commit data...
SnptestToVcf.scala Loading commit data...
SquishBed.scala Loading commit data...
SummaryToTsv.scala Loading commit data...
ValidateFastq.scala Loading commit data...
ValidateVcf.scala Loading commit data...
VcfFilter.scala Loading commit data...
VcfToTsv.scala Loading commit data...
VcfWithVcf.scala Loading commit data...
VepNormalizer.scala Loading commit data...
WipeReads.scala Loading commit data...
XcnvToBed.scala Loading commit data...