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Created with Raphaël 2.2.022Dec211817161514131110764330Nov29272625242320191817161211109876543231Oct30292827262523222120191615141312987652130Sep29282725242322211817Merge branch 'fix-issue_248' into 'develop' Style fixesFix issue #248Merge branch 'fix-indelrealigner' into 'develop' Fix indelrealignerSwitch shiva to multisample mappingAdded files to summaryAdd bam linkingAdding merge strategiesAdded pipeline to executableInit setup for multisample mapping pipelineAdded tool for merging otu mapsAdded properties for debugingMerge branch 'feature-bowtie2' into 'develop' Change back to getAdd settingsFixed double flexiprepRemove unneeded if statementFixed sample and lib id for flexiprepFix sample IDsMore fail safeSimplifyFixed argsStyle fixesSwitch to sample based analysisFixed wrong jobRemoved unused importRaise memoryAdding todo'sAdded merge of otu tables and mapsExpose subpipelinesAdded output filesAdded output filesAdded extension for merge otu mapsAdded extension for merge otu tablesRaise default memoryAlways use -fStyle changesFixed outputdirRemoved unused import