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Created with Raphaël 2.2.013Jul87654129Jun2827242120171514131087632131May302927262524232019181715141312111098765432130Apr2928272625222118161514131211108765fix for #372adding window length option to cnmopsMerge branch 'develop' into add-cnmops-kopisuUpdate release notes with past-tense writing..Add text to options parserImproved DocumentationAdd text to options parserAdded better type castingImproved documentationImproved documentationCreated a help page for BaseCounter. It is incompleteAdded text in the options parserImprove documentation for AnnotateVcfWithBedAdded scala docsRemove unused importsFixed operatorMerge branch 'fix_mapping_summary' into 'develop' Style changesAdded clipping statsimproved futures collectingAdded base version of quality and insertsize histogramCreate a documentation for AnnotateVcfWithBedMade a future based toolposible to get list from dict nowAdded a stats class for bamstatsImprove user documentation for the toolInclude AnnotateVcfWithBedmd in mkdocs.ymlCreate mocumentation for Annotate VcfWithBedChange argumnet description for ToolCommandMerge branch 'fix-gentrap_test_runtime' into 'develop' Merge branch 'fix-insertsize_single_end' into 'develop' Remove insertsize tag from summary when not executedChange argumnet descriptionFix picard tool usage Code. Replace JSON with YAML examplesFix typoUpdated and added some release notes relevant to mention for v0.7.0Fixed testFixed gtf outputFixed output file argFormat fixes