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Created with Raphaël 2.2.026Oct252421171413121110654329Sep2827262221201917161513102131Aug2625242322211817151110954129Jul28262522212019141387654129Jun2827242120171514131087632131May302927262524232019181715141312111098765432Added version tag for vepmake use of utils for versionremove checks for existence of directories; they might not exist yet at script timeMerge branch 'feature-single_bed_sort' into 'develop' Fix BIOPET-396For for BIOPET-389Fix for BIOPET-395Merge branch 'feature-sample_regex' into 'develop' Changed var nameAdded text to argsRemove argument line from queueOutput is now as csvFix testtrimmed VersionCommand and test classMerge branch 'develop' into add-cnmops-kopisuautostyle and test fixget correct values for number=A and number=RMerge branch 'develop' into feature-vcfwithvcf-numberUpdateMerge branch 'feature-convenience-version' into 'develop' small extra com mentSimplify regex fetchingGeneral collector methodsemantic version convenience methodsAdded regex optionautostyleversion checkAdding genral feature for json extractionversion in rscript for cn mopsget method for output filesuse Option[File] for output dir in stead of StringRead all info from gitlabAdd paged methodAdded base tool to fetch issues from gitlabgracecully exitlimit wall clock time to max 2 hours per defaultraise default starting memoryMerge branch 'feature-centrifuge' into 'develop' Fix gzipFixed unit test