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Created with Raphaël 2.2.015Jan14131210986517Dec1611985432128Nov272524222120191817141211108765432131Oct302928272524232221201716151413109876Adding imls to prevent major headachesMerge remote-tracking branch 'origin/develop' into feature-gentrapMerge branch 'develop' into feature-toucanAdded a null value on NoneAdd new config report to biopetQScriptFirst version of new config reportMerge branch 'develop' into feature-Chipcapfirst step mapping is done, tested and works okeMerge branch 'feature-config_unittest' into 'develop'Added scala docsMerge branch 'feature-fix_contams' into 'develop'Merge branch 'feature-prefix_fastq' into 'develop'Merge branch 'feature-improve_fastqSplitter' into 'develop'Remove old scriptMerge branch 'feature-annotate_bed' into 'develop'Switch to method for adaptersFix for multiple tabs in contams fileAdded getFoundAdapters methodAdded scala docsAdded scala docsAdded scala docsRemove old scriptsSwitch to new toolMake prefix requiredAdded constructorRefactor config valuesAdded queue wrapperAdd tool to replace python scriptRemove old pipeline, new tool replace this functionUses a data provider for testGetValueFromMap methodAdd more scala docsRemove MockitoSugarAdd more functionalityCode optimizations and add getSamples methodFirst version of VcfStats tool for #93Added tool to executableFix sortingFirst version of toolAdd more loggingChange to fastq reader from htsjdk