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biopet.biopet
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ef7186db65c02c1e2ae9719d3bdc7f30008cc033
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12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
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31 results
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Created with Raphaël 2.2.0
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attempt to fix vcfstats so that it will always output something, even if there are 0 variants
Merge branch 'feature-sync_stats_report' into 'develop'
Added sync stats to report
Style fix
Update documentation accordingly
Change default settings to VALIDATED settings .
Merge branch 'feature-hisat2' into 'develop'
Raise memory
Added threads flag
Added docs
Added mapping tests for hisat2
Added to generateIndexes
Added hisat2build extension
Fixed unit tests
Fixed file name
Updated to uncompressed downsample file
fix rscript
Raise memory
Merge branch 'feature-queue_3.6' into 'develop'
Fix shiva variantcalling
Fix arguments
Formatting
Fix outputpath for the individual contig outptu
Update on the CNmops wrappers and Kopisu pipeline (call for all contigs in the genome)
Add documentation for hisat2 support in gentrap
Put scattering back in for baserecalibration
Switch to Queue 3.6
Add hisat2 to mapping
Ensure the correct hisat2 index extension is detected
Style updates
Add initial hisat2 wrapper
Merge branch 'fix-bedtools_coverage_sorted' into 'develop'
Merge branch 'feature-imptute_to_vcf' into 'develop'
Merge branch 'fix-haplotypercaller' into 'develop'
autostyle fixes
Adding CNmops as method to Kopisu
Change val name
Switch to picard for id sorting
downsampling after QC step of gears
Merge branch 'fix-star-mapping-keep-unmapped' into 'develop'
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