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Created with Raphaël 2.2.07Aug654130Jul29282724232221181514327Jun26232119171312109654327May2621201514Added summary formatAdded sample and library to flexiprepMerge commit '5041650ce6af0a4f1d236911f666270be20b1be3' into peterRemoved old summary and fix file name for new summaryFinalize summary structureAdded getSummary functionMake Sample and library name requiredFix on stats output fileAdded SeqtkSeq to flexiprepAdded a freeVar option to the configFix end lines on output buffersFix exitcode on version commandAdded constructorRemoved unused importschanged output on getVersion on failgetVersion now also use stderr, also log output when version command is failedAdded contaminans optionChanged adapter option to Set[String]Merge remote-tracking branch 'origin/bow' into peterfix on test fileFix on outputdir for flexiprepUse of new constructorsAdded constructor and moved Lazy variables in 1 functionAdded mkdir on outputDirAdded contructorAdded SeqtkSeq function to FlexiprepFix optional symlink error in Cutadapt step in Flexiprepcutadapt config parse fixWrappers are now split in general and specific flexiprep extensionsChanged config back because of compatibility issuesRemove unused importsUpdate style and exclude JSON defs from style reformattingStyle reformattingFix bug in Flexiprep python summary scriptFix flexiprep summary json parsingFix on output directories of sha1sum and seqstatFix Ln import with new namespaceMerge remote-tracking branch 'upstream/peter'Flexiprep passes jobs to new summaryAdd gentrap scripts