Skip to content
Snippets Groups Projects
Select Git revision
  • biopet-bios
  • develop
  • epic-BIOPET-669
  • example-tarextract
  • fix-BIOPET-245
  • fix-BIOPET-593
  • fix-BIOPET-724
  • fix-BIOPET-728
  • fix-BIOPET-730
  • fix-BIOPET-782
  • gonl-GRCh38
  • master default
  • v0.9.0
  • v0.8.0
  • BIOS
  • v0.7.0
  • v0.6.0
  • v0.5.0
  • v0.4.0
  • v0.4.0-RC2
  • v0.4.0-RC1
  • v0.3.2
  • v0.3.1
  • v0.3.0
  • v0.2.0
  • start-feature-branching
  • v0.1.4
  • v0.1.2
  • v0.1.1
  • v0.1.0
  • 0.1.0
31 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.02Mar129Feb262524232221181716151211109875432129Jan28272625232221201918171514121110865430Dec29282625242322211817161514131110764330Nov292726252423fix code exampleMerge branch 'feature-docs-0.6.0' of git.lumc.nl:biopet/biopet into feature-docs-0.6.0summary documentationAdded header to bam fileFix for gears single end bam filestest vcf filter extensionFix Cutadapt statistics to store Long values. Tests hit the Int.maxMerge branch 'feature-skip_abort' into 'develop' Merge branch 'fix-278' into 'develop' Merge branch 'feature-vep_custom' into developUse List[_] instead of Option[_] for VEP's --custom flagdo not put header in resulting map agianmore spelling mistakesfix typo.correct foldleft functionsummary for vepReformat release notes for 0.6.0Update gentrap options, reflecting the refactor.Merge branch 'feature-dict_check' into 'develop' Adding tests to Flexiprep to cover the FastQ validation and abort on corrupt FastQformattingRemoving png extension (these will be added by the R script for the specific chromosomes plottedAnother filename and output directory manglingSimplify the report for plots for Gentrap / TinyCap heatmaps. Only 1 template file, defining the picture path in the Report instead of the template.Merge branch 'develop' into feature-small_rnaMerge remote-tracking branch 'remotes/origin/fix-278' into feature-skip_abortFix scriptMerge branch 'feature-tagging' into 'develop' TypoChange paths for the FreeC output.fix protected flagLet kopisu run for more than one sampleTypoFixed intermediateMerge branch 'feature-seqstat-reportfragmentlengths' into 'develop' pindel2vcf is crashing on unknown arguments. remove the dummy argument (used as requirement to link to pindel) Not needed anymore.progress counter in seqstat`len_histogram` is a List now, starting from 0 and ends at the max length of found sequencesAdd mock test to FreeCAdded tags documentation