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Created with Raphaël 2.2.030May2927262524232019181715141312111098765432130Apr29282726252221181615141312111087654131Mar30292524232119181716151413Added downsample option to gearsAdding seqtk sample extensionInit commit for bamstatsMerge branch 'feature-unique_sample_filter' into 'develop' Added autodetect fileformat pairedAdding error on missing allelesExtract impute to vcf as separated pipelineMerge branch 'fix-gatk-license' into 'develop' Merge branch 'develop' into fix-bedtools_coverage_sortedsort input bed and fix testcreate genome file only once per fasta indexchange ALL licenses across all files.also change docs to reflect new licenseCorrect duplicate precentage for secondary readsMerge remote-tracking branch 'origin/develop' into developCorrect mapping precentage for secondary readsFix compile errorCode improvementFilter references callsFix compile errorFixed denovo filterStyle fixMerge branch 'fix-mapping_plot' into 'develop' Fix mapping plot in reportStyle fixMerge branch 'fix-report' into 'develop' fix #348Added more filter optionsSomehow the rootpath was brokendefault id sortingMake new bam file intemediateFix styleAdd name arg to htseqAdded id sorting stepMerge remote-tracking branch 'origin/develop' into developremove gatk-specific parts from licenseAdded more testsMerge branch 'fix-svcallers-vcf' into 'develop' Fix tabix stepRemove deps on intermediates