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Created with Raphaël 2.2.08Feb75432129Jan28272625232221201918171514121110865430Dec29282625242322211817161514131110764330Nov29272625242320191817161211109876543231Oct30292827Hide insertsize plot on single end runsHide R2 plots when single endFix order is sectionsAlways show alignment plotStyle fixCutadapt fix output Map (stored with statistics read from outputfile)Merge remote-tracking branch 'remotes/origin/develop' into feature-measure_modulesMerge branch 'feature-small_rna_flexiprepadapters' into 'feature-small_rna' Merge branch 'feature-qiime' into 'develop' Fixed merge intermediateAdded extension for fasta filesStyle fixesAdded testing for qiime biom to krona methodAdded testing for kraken to krona methodadd new checksadd logger info for the total nr of reads at the endadd DNA base check (testing still needed)Fixed testsAdded documentationAdded testing to gears pipelineAnd the actual code that uses the sensitiveAdapterSearchDisable "sensitiveAdapterSearch" for fastqc by default and enable within TinyCapAdded gears to multi mappingRewrite a bit on a sentence about "depending"Added more methods to testchange "download" links to buttonsremove countline and add some documentationTinyCap report baseadded a new tool to validate if paired end sequences are in syncUpdates in report, visual changes (cleaner and sorted) ...Fix bug with opening to many filesReport update, sorting order (display)Adding regex for the Cutadapt 1.7+Fixed bug in LnAdded md5 check to pipelineMerge remote-tracking branch 'remotes/origin/develop' into feature-qiimeAdding additional GTF annotation for the other smallRNAfixed default name for output fileRemove outputDir as output filefixed output file of basecounter