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Created with Raphaël 2.2.09Sep8765432131Aug3029282726252423222120191817161514131211643130Jul28272423222117167632130Jun292827262524232221191716151098765432129May28272619Change logging to logger.infoFix ode styleAuto style fixesfinishing up VcfStatsTEstadd testCheckGeneralAdding basic unit testsFix code warningsAdded threads to pipeMove class to seperated fileFix compile errorsort testvalidation of wiggle track optionstesting main and valuefromtsvtesting map mergerscreate test stubsValidations and text messages for VcfStats optparserfix for #200Piping compliantPiping compliantPiping compliantRemove sumarizable from seqtkSwitch seqstat to init jobsAdding stdinFixing version in exampleMerge remote-tracking branch 'origin/develop' into feature-external_examplesAdding '>' methodAdded '|' methodSageCreateTagCountsTestfix SageCreateTagCountsMerge branch 'fix-dependencies' into 'develop' autostyle fixesSageCreateLibraryTestfixing SageCreateLibraryMerge branch 'develop' into feature-pipeableReverted version changeMerge branch 'fix-dev_to_snapshot' into 'develop' Remove unneeded class. java and non-java jobs now both using def cmdLineSwitch bowtie and gsnap to fixed valuesAdded unit tests for fixed valuesCode style fix