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biopet.biopet
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ce93afa8ecaf3fabe8109e662310514711428d09
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Branches
12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
default
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19
v0.9.0
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31 results
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Created with Raphaël 2.2.0
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Merge branch 'feature-gentrap_additions' into 'develop'
Merge branch 'feature-seqstat_updates' into 'develop'
Merge branch 'issue168' into 'develop'
Merge branch 'feature-fix_java_version' into 'develop'
add hotfix notes
Fix code style warnings by IDE
possible to override defaultVmemFactor now
Adding more information for each executable to summary
Change template
Remove sortable tables from file lists
front page message
flexiprep base messages
flexiprep read messages
Added reference info
Added reference page
Remove todo
Style change
Changes method name
Added scala docs
Add more stats to summary from flexiprep
Set default config for CollectRnaSeqMetrics RefFlat value
Update example config for Gentrap
Rename num_qual_gte on reads to num_avg_qual_gte
Add CollectRnaSeqMetrics histogram to summary file
Use absolute path for tophat fix output
Update default memory settings
Update Gentrap test for compatibility with new reference
Update BamMetrics RNA mode and its tests
Style updates
Rename SeqStat in summary for consistency
Update 'num_qual_gte' to 'num_qual' array
Remove 'num_n' in base stats since we already have 'nucleotides.N'
Rename Seqstat -> SeqStat
Cleanup + style updates
Add step for merging unmapped and mapped tophat alignment files
Add missing stats display in Gentrap report
variant messages
insert size messages
Initial Gentrap update to use new Metrics module
proper alignment summaries
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