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Created with Raphaël 2.2.025Nov242320191817161211109876543231Oct30292827262523222120191615141312987652130Sep29282725242322211817161413111098765432131Aug30Set defaults for Boolean valuesAdd bowtie2 to Mapping (and add wrapper for bowtie2)Remove whitespaceFixed outputDirsConvert breakdancer to sub pipeline of shivaMerge branch 'develop' into feature-cnvpipelineMerge remote-tracking branch 'remotes/origin/develop' into feature-delly-mergeMerge branch 'develop' into shiva-refactorMerge branch 'release-0.5.0' into developBump version to 0.6.0-SNAPSHOTMerge branch 'release-0.5.0'v0.5.0v0.5.0Bump version to 0.5.0Split into separated filesSplit sv callers into separated classesBump to 0.5.0-RC2Added summary jobs to toucanAdded target variants to reportAdded intermediateFixed nameprefixAdded tbi output fileAdded module to config valueAdding decompose option to shivaAdding vt decompose extensionAdded normalize option to shivaFixed argsAdded vt normalizer extensionFixed summary jobs for carpAdded vcf stats for each region bed fileRemove addSummaryJobs()Split variantcalllers in separated filesFixed bowtie indexMerge branch 'develop' into feature-vardaCRLF issue fixedMake compilable version after merging in changes from DevelopBumb version to 0.5.0-RC1Fixed license headersMerge remote-tracking branch 'origin/feature-cnvpipeline' into feature-cnvpipelineSync with developFixed License filesSync with develop