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Created with Raphaël 2.2.025Apr2221181615141312111087654131Mar3029252423211918171615141311109875432129Feb262524232221181716151211109875432129Jan28272625Added exclusion for gatk toolsSwitch list to a set to speedup scriptAdded more logging to multisample pipelinesMerge branch 'fix-samplenames_qiime' into 'develop' Format fixedFixed tryreplace _ for -Merge branch 'feature-fixStarOptions' into 'develop' Merge branch 'fix-vcffilter_test' into 'develop' Merge branch 'fix-vcfstatssummary' into 'develop' Format fixFixed vcffilter testMerge branch 'develop' into feature-cnvpipelinePlot whole genome CNVsMerge remote-tracking branch 'remotes/origin/develop' into feature-scatter_annotationAllow custom adapters.Change to flatmapChange arg to multiargRemove unused importMerge branch 'feature-vcf_reference_check' into 'develop' Fixed unit testsfix errmsgstarter for a test of toucanAdded last star argumentsMerge remote-tracking branch 'remotes/origin/develop' into feature-fixStarOptionsForce reference dict in vcf to check on unknown contigsMerge branch 'feature-snp_test' into 'develop' have toucan use groupsMerge branch 'develop' into feature-cutadapt-adapterreportingMerge branch 'feature-fix-warnings' into 'develop' tagging infoAdding descriptive help to the commandline helpfix #329Add documentation about BIOS countsFix compile errorMerge remote-tracking branch 'remotes/origin/develop' into feature-snp_testMerge branch 'develop' into feature-cnvpipelineAdding descriptive help to the commandline helpadd missing gitignoreMerge branch 'develop' into feature-fix-warnings