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biopet.biopet
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be731b74ffe9d9e931b7b502c00fca7559113f13
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12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
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Created with Raphaël 2.2.0
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add the options in the list
Fix fix_iupac
Add output tests to gvcf2bed.
Merge branch 'fix-invalid-sample' into 'develop'
Remove correctDict
Fix dict check
autostyle changes
Add tinycap to aggregate for scoverage
Fix and test #280
Add tinycap to aggregate for scoverage
Change tests to accept pindel
Merge from develop
Change default settings. Move min_length of 8 to 15 (advise from Henk Buermans)
Fix FastQC test since we now include the reverse complement of a found adapter, the test had to be modified to check the change.
Fixed python exe
Added index as output file
Merge branch 'develop' into feature-small_rna
No piping anymore
Style fixed
Added fix mpileup for bcftools
style fixes
Merge branch 'feature-pindelwrapper' into 'develop'
Recover the licence files
Optimalizations
Added check on sequence dictionary
Merge branch 'memory-docs' into 'feature-docs-0.6.0'
Spelling error checks
Remove Yamsvp code and optimize BamUtils.
Optimizations... style
Merge branch 'develop' into feature-mergesvcalls
Adding tests for BamUtils
Adding pindel tests
Order fixes
Spelling fixes
Merge branch 'develop' into feature-pindelwrapper
Merge branch 'develop' into feature-pindelwrapper
Rename of filenames
Merge branch 'feature-sv_unit_tests' into 'develop'
Added explainasion about value per core
Added test for bam arg
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