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biopet.biopet
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b89053254f945dafd03154c3a03014e79b2873bd
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12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
default
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31 results
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Created with Raphaël 2.2.0
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Generate bamstats on the dedup
Merge branch 'develop' of git.lumc.nl:biopet/biopet into feature-yamsvp
Fix xy plot
WIP: abstract over processing units
Added plots
also remove now completely redundant examples.json
Removed VCFFreqAnnotator (going to be vcfwithvcf annotator in own branch)
Change Sage pipeline for multisample classes
Added defaultSample and defaultLibrary
Added a template as example
Change sample to var
Switch Sage pipeline to new abstract classes
New abstract classes for samples and libraries
Fixed nullpointer
Changes in format of heatmap
Changing pipeline to improved multisampleQScript
Simplify multisampleQscript
Merge branch 'feature-improve_config_report' into 'develop'
Added a TODO to change files and strings
Fix on md5 check
Remove unused vars
make aln/sampe/samse jobs intermediate
Added bwa aln to mapping pipeline
AddedOutput not required
Added sampe
Added samse
Added bwa aln extension
Make new package for bwa
Move aligners to nl.lumc.sasc.biopet.exetensions
Fix unit testing
Adding check for database and cache. Removing print statements in normalizer test
Remove old report
Make null values in json possible as input
Fix RGPI config var
Fix default sample and library
Remove unused function
Switch to config instead of sampleConfig and libraryConfig
Added sub path instead of submodule
Fix Path orders
Added merged input config
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