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Created with Raphaël 2.2.022Nov21201918171614111098754231Oct282726252421171413121110654329Sep2827262221201917161513102131Aug2625242322211817151110954129Jul28262522212019141387654129Jun2827242120171514131087632131May3029272625242320191817151413121110Fixing buttonsAdded clipping and mapping quality to multisamplemappingreportFixed tsv parsingFixed typoAdded Centrifuge to list of available options, included the -jobQueue all.q optionFixed errorFixed bugAdding clipping and mapping quality plots to reportFormat fixesImplement new methodsAdded common functionsMerge branch 'feature_annotation_versions' into 'develop' Added a bit more docs to argAdded centrifuge to docsMerge branch 'fix-BIOPET-353' into 'develop' Explict test noExceptionChanged to smaller and readable testAdded text to argumentsAdd bamstats to summaryFix output filesSimplify lineplot codeChanged reports summary valuesAdding mapping quality and clipping stats to summaryFixed unit testsMoving flagstats from bamstats to summaryFixed bamstats for single endAdded referenceFixed compile errorAdding output fileAdd basic version of bamstats to pipelineFixing BIOPET-353Fixing config filesFixed testMerge remote-tracking branch 'remotes/origin/develop' into feature_annotation_versionsAdded unit testsMerge branch 'fix-BIOPET-383' into 'develop' autostyle fixesMerge branch 'fix-BIOPET-458' into 'develop' fix testsFormat change