Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
B
biopet.biopet
Manage
Activity
Members
Code
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Container Registry
Model registry
Operate
Environments
Analyze
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Mirrors
biopet.biopet
Repository graph
Repository graph
You can move around the graph by using the arrow keys.
ae94babe64fc8b3390aef505c914757135a8f623
Select Git revision
Branches
12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
default
Tags
19
v0.9.0
v0.8.0
BIOS
v0.7.0
v0.6.0
v0.5.0
v0.4.0
v0.4.0-RC2
v0.4.0-RC1
v0.3.2
v0.3.1
v0.3.0
v0.2.0
start-feature-branching
v0.1.4
v0.1.2
v0.1.1
v0.1.0
0.1.0
31 results
Begin with the selected commit
Created with Raphaël 2.2.0
26
Aug
25
24
23
22
21
20
19
18
17
16
15
14
13
12
11
6
4
3
1
30
Jul
28
27
24
23
22
21
17
16
7
6
3
2
1
30
Jun
29
28
27
26
25
24
23
22
21
19
17
16
15
10
9
8
7
6
5
4
3
2
1
29
May
28
27
26
19
18
14
13
12
11
10
9
7
4
1
30
Apr
29
28
23
20
16
15
14
13
12
10
9
8
Adding method to test scatter
Added fromReference method
fixed command
Adding a scatter method
CheckAllelesVcfInBam testing.
small refactor: method name correction
BiopetFlagStat testing
Added option to suply fasta file as seperated fasta files
Raised memory for star
Merge branch 'fix-tophat_unittests' into 'develop'
Fixed tophat unittests
Merge remote-tracking branch 'origin/develop' into feature-region_af_count
Merge remote-tracking branch 'origin/develop' into feature-option_keep_files_flexiprep
Fixed testing
Merge branch 'fix-aligners' into 'develop'
Merge branch 'fix-index_output_mergeSam' into 'develop'
changed error to warn
Added more, now almost 100% coverage
Added write header to writeToFile
Adding index file as output file for queue
Writing and removing test files
Adding toSamInterval method
Adding ExonIntronOverlap test
Adde more test for BedRecord
Adding basic testing
Change to IndexedSeq
Correct 1-based to 0 based
Switch wipereads to biopet bed reader
Switch to biopet bed parser
Moved clode statement to finally
Added close to reader
Change name
Fixed statement
Added a check for tophat on index files
Added auto detect on large indexes for bowtie
Remove unused values
Refactor RegionAfCount, 10-20 times faster now
Sets utrs to None when not existing
Move combine method inside class
Fix match
Loading