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Created with Raphaël 2.2.08Nov754231Oct282726252421171413121110654329Sep2827262221201917161513102131Aug2625242322211817151110954129Jul28262522212019141387654129Jun2827242120171514131087632131May3029272625242320191817151413121110987654Fixed compile issuesAdded all arg to centrifugeFixed testadding tests. Individual functions work, but not in the main function?Merge branch 'develop' into feature-vcfwithvcf-numberSwitch to lazy errorFixed file namesMerge branch 'feature-gitlab_issues' into 'develop' Added extra exepctionFix formatFix BIOPET-410Fix for BIOPET-398Add fix for BIOPET-411Sortvcf on the endMerge remote-tracking branch 'remotes/origin/develop' into feature-gitlab_issuesRemoved toolMerge branch 'feature-fastq_filter' into 'develop' Added unit testAdd a new toolMerge branch 'add-cnmops-kopisu' into 'develop' use correct location for time limitMerge branch 'develop' into add-cnmops-kopisuMerge branch 'fix-pysvtools' into 'develop' Merge branch 'feature-walltime' into 'develop' Fix for BIOPET-399Added testing for dbsnpMerge remote-tracking branch 'remotes/origin/develop' into feature_annotation_versionsFixed vep configjobtimelimit in coreuse cached dict in referenceMerge branch 'develop' into add-cnmops-kopisuMerge branch 'feature-dict_cache' into 'develop' Remove double addStyle fixAdded version tag for vepmake use of utils for versionremove checks for existence of directories; they might not exist yet at script timeMerge branch 'feature-single_bed_sort' into 'develop' Fix BIOPET-396For for BIOPET-389