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Created with Raphaël 2.2.018May1413121110974130Apr2928232016151413121098764230Mar2726252423201918171615141312111098765432127Feb26Change stats to histogramfixed group functionChange method singatureAdded Some() support to anyToJsonAdded functions to difrent formatsUpdate some links in README.mdTitan script unmodified exampleAdding report to shiva pipelineFix version issuestash workbookTitan script unmodified exampleMerge branch 'develop' into feature-referenceMerge branch 'develop' into feature-reportMerge branch 'feature-vcffilter_trio_filters' into 'develop'Added scaladocscmdArgs is now immutableMerge branch 'feature-fixMappingPipeline-zcat' into 'develop'change mem limitRefactor some codeAdded trioCompound optionAdded resToDom optionAdded calledIn optionAdded trio denovo filtersMerge branch 'fix-mpileup_to_vcf' into 'develop'Fixed typoAdded catch for U to TRaise default memoryAdded default output fileConvert R2 to Option[File]Added java memory in retry methodRaise default memoryCheck reference allele to allowed vcf charsUpdate gears pipeline with new Kraken settings..Merge branch 'feature-improved_bammetrics' into 'develop'Merge branch 'patch-AnnotateVcfWithBed' into 'develop'Fix flag handling and add some loggingAdded unit test for bammetricsChange bed files in summaryAdded plots for front page of reportAdded extension for stacked bar plot