Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
B
biopet.biopet
Manage
Activity
Members
Code
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Container registry
Model registry
Operate
Environments
Analyze
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
GitLab community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Mirrors
biopet.biopet
Repository graph
Repository graph
You can move around the graph by using the arrow keys.
a10bd09e6ce841d60a672b467de722207f77b959
Select Git revision
Selected
a10bd09e6ce841d60a672b467de722207f77b959
Branches
12
master
default
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
Tags
19
v0.9.0
v0.8.0
BIOS
v0.7.0
v0.6.0
v0.5.0
v0.4.0
v0.4.0-RC2
v0.4.0-RC1
v0.3.2
v0.3.1
v0.3.0
v0.2.0
start-feature-branching
v0.1.4
v0.1.2
v0.1.1
v0.1.0
0.1.0
32 results
Begin with the selected commit
Created with Raphaël 2.2.0
13
Apr
12
10
9
8
7
6
4
2
30
Mar
27
26
25
24
23
20
19
18
17
16
15
14
13
12
11
10
9
8
7
6
5
4
3
2
1
27
Feb
26
24
23
19
18
17
Merge branch 'fix-vcfwriters' into 'develop'
adding separator arguments such that one can use a different separator than merely tab-delimited
naming conventions of default fields
more spelling
consistency of naming conventions (using VCF names of fields) and spelling
Merge branch 'bowtie_extra_option' into 'develop'
Added dummy sections for alignment
add explanation of files to README
Adding MergeAllelesTest and dependencies
adding checkAllelesVcfInBamTest stub and adding bgzipped and tabixed VCF files for tools that need indexed files
adding Test decorators
VcfWithVcfTest stub
typos and grammar
AnnotateVcfWithBedTest stub and improve argument descriptions in AnnotateVcfWithBed
adding VcfFilterTest stub
Adding front page for shiva
Added default sample and library lists
testing different output modes
Adding clipping and trimming stats
Extended flexiprep summaries
added extra options to bowtie
setting reference dictionaries
Adding plots to flexiprep
set sequence dicttionary for vepnormalizer
camelCase for arguments in VcfFilter. See issue #153
give reference dictionary to writer
Try to convert numeric values appropriately in Picard metrics parsing
Cleanup Picard imports
Add utility function for parsing numbers
Merge branch 'patch-meta_in_summary' into 'develop'
Merge branch 'patch-extractalignedfastq' into 'develop'
Merge branch 'patch-mpileup' into 'develop'
Merge branch 'feature-yaml_support' into 'develop'
Fix bug in flexiprep table
make reference specific config values
Added reference module to toucan
Added Reference to gentrap test
Adding reference stats to summary
Change naming
Switch pipeline to reference module
Loading