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Created with Raphaël 2.2.022Aug2120191817161514131211643130Jul28272423222117167632130Jun292827262524232221191716151098765432129May28272619181413121110974130Apr2928232016151413121098764230Mar27Code style fixesAdded write to file optionAdding originals to combinedAdding exons and intronsSwitch strand to Option[Boolean]Added message to exceptionAdded squish methodSwitch to other bed readerAdded a generic bed readerRemove val, no need for itAdded a bedRecord with a parserAdded option to only use the exons from a bed fileAdded scatterPlot as argumentAdded a scatter plotCombining duplicates recordsFixed typeAdded a scatter plotChanged order of inputChanged default max threadsAdded loggingRemove env valueFix star output filesfixed bowtie commandMerge branch 'feature-improve_sample_tsv' into 'develop' Fixed typoFixed typoAdded basic version of toolchanges in docsMerge branch 'feature-fast_build' into 'develop' Template for new toolChanged default mode for VepNormalizerFix indexes location of bowtieFix tophat configFix output fileMerge branch 'fix-mapping_report' into 'develop' Fix inversionRaise memory requirements for gmap_buildStyle fixAdded reference trait for tophatAdded reference trait for tophat
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