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Created with Raphaël 2.2.020Jun171514131087632131May302927262524232019181715141312111098765432130Apr29282726252221181615141312111087654131Mar30292524Added a skip option in merge otu maps toolAdded report to qiime open referenceAdded open reference methodATAC seq configDisable default library callingfix output dir of pngsFix image size for whole genome plotFixed output files nameRegister outputfiles for reporting.Merge branch 'feature-idsort_htseq' into 'develop' Adding more loggingMerge remote-tracking branch 'remotes/origin/develop' into feature-downloadsample_gearsMerge branch 'fix-smallrna-defaultsettings' into 'develop' Remove unused importsMerge branch 'fix-memory' into 'develop' Merge branch 'fix-sample_flexiprep' into 'develop' Style fixesAdded test for no sample to flexiprepAdded test for no sampleFixed gears testsFixed sample and library checkmake it not set2make it not setattempt to fix vcfstats so that it will always output something, even if there are 0 variantsMerge branch 'feature-sync_stats_report' into 'develop' Added sync stats to reportStyle fixUpdate documentation accordinglyChange default settings to VALIDATED settings .Merge branch 'feature-hisat2' into 'develop' Raise memoryAdded threads flagAdded docsAdded mapping tests for hisat2Added to generateIndexesAdded hisat2build extensionFixed unit testsFixed file nameUpdated to uncompressed downsample filefix rscript