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Created with Raphaël 2.2.018Dec17161514131110764330Nov29272625242320191817161211109876543231Oct30292827262523222120191615141312987652130Sep292827252423222118171614Add settingsFixed double flexiprepRemove unneeded if statementFixed sample and lib id for flexiprepFix sample IDsMore fail safeSimplifyFixed argsStyle fixesSwitch to sample based analysisFixed wrong jobRemoved unused importRaise memoryAdding todo'sAdded merge of otu tables and mapsExpose subpipelinesAdded output filesAdded output filesAdded extension for merge otu mapsAdded extension for merge otu tablesRaise default memoryAlways use -fStyle changesFixed outputdirRemoved unused importSimplify modulesMerge remote-tracking branch 'remotes/origin/develop' into feature-qiimeAdded closed reference methodAdded extension for clased reference otu pickingAdding output filesAdded extension for flashChange default regexesMerge branch 'fix-238' into 'develop' Merge remote-tracking branch 'remotes/origin/develop' into fix-238Merge branch 'fix-bammetrics_summary_switchup' into 'develop' Fix wrong metrics addition in BamMetricsRefactor match statementsMerge branch 'fix-CollectGcBiasMetrics' into 'develop' Merge branch 'fix-scatter' into 'develop' Fixed dir of samtools flagstat