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Created with Raphaël 2.2.030Jun292827262524232221191716151098765432129May28272619181413121110974130Apr2928232016151413121098764230Mar2726252423201918171615141312111098765possible to override defaultVmemFactor nowAdding more information for each executable to summaryChange templateRemove sortable tables from file listsfront page messageflexiprep base messagesflexiprep read messagesAdded reference infoAdded reference pageRemove todoStyle changeChanges method nameAdded scala docsAdd more stats to summary from flexiprepSet default config for CollectRnaSeqMetrics RefFlat valueUpdate example config for GentrapRename num_qual_gte on reads to num_avg_qual_gteAdd CollectRnaSeqMetrics histogram to summary fileUse absolute path for tophat fix outputUpdate default memory settingsUpdate Gentrap test for compatibility with new referenceUpdate BamMetrics RNA mode and its testsStyle updatesRename SeqStat in summary for consistencyUpdate 'num_qual_gte' to 'num_qual' arrayRemove 'num_n' in base stats since we already have 'nucleotides.N'Rename Seqstat -> SeqStatCleanup + style updatesAdd step for merging unmapped and mapped tophat alignment filesAdd missing stats display in Gentrap reportvariant messagesinsert size messagesInitial Gentrap update to use new Metrics moduleproper alignment summariesmove to top dir instead of toolsadded preliminary version of release notesadded preliminary version of release notesRemove test codeAdded initial version of gentrap reportFix pipeline name