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biopet.biopet
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6ea16550a048e9c305cbd922197288727c067c07
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12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
default
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31 results
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Created with Raphaël 2.2.0
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Merge branch 'fix-memory_test_threads' into 'develop'
Limit memory for each test thread
Style fix
Merge branch 'feature-parralel_mapping_tests' into 'develop'
added tabix to bcftools output
fix shiva test
Merge branch 'develop' into feature-cnvpipeline
Merge branch 'develop' into feature-generate_indexes
Merge branch 'feature-dev_docs' into feature-docs-0.5.0
Merge branch 'develop' into feature-docs-0.5.0
Merge remote-tracking branch 'remotes/origin/fix-mapping' into feature-parralel_mapping_tests
Gentrap test are now divided over 7 threads
Rename file
Remove some test and optimize code
Each aligner has his own class now
added proper piping to bcftools and mpileup. [GENTRAP VARSCAN SHOULD BE TESTED]
Merge branch 'feature-scoverage' into 'develop'
Added jobs to pipejobs
Remove "reference" from testing
Remove "reference" from testing
Code style
Fix code warnings
dependency graph is now correct
added bcftools_singlesample
Fixed version to single end executables
Fix picard versions
Output singleton reads (in case the input bam had dedup with removal turned on)
autofixes
get sample names from vcf when pipeline is started by itself
create config on the fly
fix tiny bug and style
varda in Toucan2
varda in Toucan
Fix MatchError
Added version check for pipe jobs
Added version to gatk commands
Extracted version in a trait
Merge branch 'fix-chunking' into 'develop'
add some tests for gvcftobed
add (g)vcf to bed tool
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