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Created with Raphaël 2.2.09May8765432130Apr29282726252221181615141312111087654131Mar3029252423211918171615141311109875432129Feb262524232221Addec config option to disable merging of countfilesNo private mutableMerge remote-tracking branch 'remotes/origin/develop' into feature-more_unit_testsMerge branch 'fix-vcf_filter_test' into 'develop' Added input and output vcf to summaryFixed summaryAdd exclusions for specific valuesRemove empty lineEmtp stats when stats file does not existNo private mutableAdding loggingSkip checks when running on an empty vcf fileCorrect testsAdd option to disable scatteringFixed file nameMerge branch 'feature-cutadapt-adapterreporting' into 'develop' Replace VEP with zcat when no variants in vcf fileAdded more test to summaryValue utilsAdded more test to summary utilsUpdate catvariantsFix compile errorsMerge remote-tracking branch 'remotes/origin/develop' into feature-scatter_annotationAdded mkdirsFix breakdancer tsv converter to vcfFix file locationMove fileMerge branch 'develop' into feature-allow-custom-adaptersMerge branch 'fix-gatk_extension_cleanup' into 'develop' Fixed region selectvariantsAdded unit tests to IoUtilsFixed implicit classMerge branch 'fix-vcftovcf' into feature-scatter_annotationCode improvementAdded scala docsRelax the reference checkFixed importMove filesMerge remote-tracking branch 'remotes/origin/develop' into feature-cutadapt-adapterreportingStyle changesMerge remote-tracking branch 'remotes/origin/develop' into feature-scatter_annotation