Skip to content
Snippets Groups Projects
Select Git revision
  • biopet-bios
  • develop
  • epic-BIOPET-669
  • example-tarextract
  • fix-BIOPET-245
  • fix-BIOPET-593
  • fix-BIOPET-724
  • fix-BIOPET-728
  • fix-BIOPET-730
  • fix-BIOPET-782
  • gonl-GRCh38
  • master default
  • v0.9.0
  • v0.8.0
  • BIOS
  • v0.7.0
  • v0.6.0
  • v0.5.0
  • v0.4.0
  • v0.4.0-RC2
  • v0.4.0-RC1
  • v0.3.2
  • v0.3.1
  • v0.3.0
  • v0.2.0
  • start-feature-branching
  • v0.1.4
  • v0.1.2
  • v0.1.1
  • v0.1.0
  • 0.1.0
31 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.02Feb129Jan28272625232221201918171514121110865430Dec29282625242322211817161514131110764330Nov29272625242320191817161211109876543231Oct302928272625232221Merge remote-tracking branch 'remotes/origin/develop' into feature-qiimeAdding additional GTF annotation for the other smallRNAfixed default name for output fileRemove outputDir as output filefixed output file of basecounterFixed summary jobstoucan docsAdded test on main methodAdded more testingRemove bed annotationAdded testing on Count classesAdded basic testsTesting with trimming all sequences - in flexiprepLimit reporting of events in REF/ALT col to < SVTYPE > (saves space and post-processingpower)Fixed bammetrics testsAdding samplingSize to BamUtils - estimateInsertSizewgs and rna metrics now got config value to enable/disable themFixed units testsOutput strandspecific wiggle/bigwig and TDF filelowering the minimum_length to be keptswitch to core rscript extensionAdded insert size estimation. Fix pindel2vcf dependency (depend on pindel, use beforegraph to set outputpath)fix code warningsAdded meta exon counts to pipelineFixed scopeMerge remote-tracking branch 'remotes/origin/develop' into feature-measure_modulesRemove old unused codeReformatAdded meta exons countsFixed gentrap testschange typo in gentrap docInsertsize estimatoradded fastq extension disclaimer to pipeline docsreorder levelsFix code warningsFixed createMetaExonCounts methodCombine overlapping genes in 1 threadMerge branch 'feature-VarscanIntoShiva' into 'develop' add SHARK config file location.explain 4 level config values