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Created with Raphaël 2.2.016Feb151211109875432129Jan28272625232221201918171514121110865430Dec29282625242322211817161514131110764330Nov29272625242320191817161211109876543231Oct30Fix small bugMerge remote-tracking branch 'remotes/origin/develop' into tool-checkFastq-pairAdded check abort step in pipelineAdding ValidateFastq to flexiprepRenamed toolAdded quality encoding checkadd some more to the test.Added duplicate checkRestore indents.Fix size of picture for smaller sample setsAdding measurement picture to report and remove redundant parts of reportRename of TinyCap to lowercap and change poms accordinglyFix file namings.. too long and not so usefull namings since the Measurement name is already in the filenameRename tinycap directoryMerge branch 'develop' into feature-small_rnaMerge branch 'fix-merge_issues' into 'develop' Fix typoSimplyfy additional sectionsFix file nameFix typoRephrase .. and typo fixTypo fixForgot adding the smallRNA countingMerge branch 'fix-bug-vcffilter' into 'develop' Forgot the key for StrandSpecificity.SECOND_READ_TRANSCRIPTION_STRAND.toStringAdd pipeline unittest (integration test)Set strandspecifity for CollectRNAseqMetricsUpdate TinyCap with Gentrap Measures and fixes some typos in the measures (from the merge)Merge from developMerge branch 'feature-measure_modules' into 'develop' Change some wordings..fix #273Fix code warningsMoved Rscript fileReplace upac symbols in mpileupRemove duplicated fileA bit on the tested setups / protocolsAdded scala docs to multisampleMappingMerge branch 'develop' into feature-small_rnaMerge remote-tracking branch 'remotes/origin/develop' into feature-measure_modules
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