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Created with Raphaël 2.2.021Sep1817161413111098765432131Aug3029282726252423222120191817161514131211643130Jul28272423222117167632130Jun292827262524232221191716Merge branch 'fix-report' into 'develop' Merge branch 'feature-external_examples' into 'develop' Fixed unit testsFastq sync is not intermediateFix protected packageAdd commentFixed case classChange nameAdd input files to pipelinesskip canRead when file does not existFastq sync is not intermediateDisable default toucanAdding input files to checkFix protected packageFix protected packageFix error cacheCode style fixFix importsSync with develop and fix build issuesFix importsMerge branch 'develop' into feature-cnvpipelineFix extensionsFixed qc stats in reportRename headerFix plots for library levelFix sample bamMetricsFix LinePlotFix pom.xmlMerge remote-tracking branch 'origin/develop' into feature-generate_indexesMerge remote-tracking branch 'origin/develop' into feature-input_files_checkingMerge remote-tracking branch 'origin/develop' into feature-fixed_valuesSwitch example to BiopetCoreMerge remote-tracking branch 'origin/develop' into feature-external_examplesMerge remote-tracking branch 'origin/develop' into feature-pipeableFixed importMerge remote-tracking branch 'origin/develop' into feature-gatk_et_optionMerge branch 'feature-split_modules' into 'develop' Change logger messageRemove $ from classFix Report builder