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biopet.biopet
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5d4c1d8046be835e757bf4261e7c3b7a7526eb7b
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Branches
12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
default
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19
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31 results
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Created with Raphaël 2.2.0
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Jan
Convert more to biopet values
Fixed type
changed default memory
Changed baserecalibrator to biopet config values
Added biopet config values to general gatk trait
Fixed type
Convert analysis_type to abstract value
Added biopet config values
Setting default for haplotypecaller
Disable gathering
Added int lists and double list to config conversions
Added method to get vcf index file
Fixed reference
Adding dbsnp automatic again
Removed complete dependency from protected modules
Make dict required for all gatk tools
Fixed reference and added version
Fixed cycle bug
Added gatk jar
Fix compile errors
Fixed default scattercount
Remove short name methods
Added objects again
Merge branch 'fix-script_run_time' into 'develop'
Remove reverse complement adapter removal
Switch to biopet scattering
Convert gatk extensions
Convert to biopet extensions
Exclude gatk-tools
Disable scattering
Remove copy class
Converting extensions
Switch list to a set to speedup script
Fix clever vcf header and add sorting step
Merge branch 'develop' into fix-svcallers-vcf
Fix REF column
Added exclusion for gatk tools
Switch list to a set to speedup script
Added more logging to multisample pipelines
Merge branch 'fix-samplenames_qiime' into 'develop'
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