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Created with Raphaël 2.2.011May1098765432130Apr29282726252221181615141312111087654131Mar3029252423211918171615141311109875432129Feb26252423Merge branch 'develop' into feature-allow-custom-adaptersAdded summary jobsStyle fixesMake kopisu more modulairRemove empty classMerge remote-tracking branch 'remotes/origin/develop' into feature-cnvpipelineMerge branch 'fix-tagged_files' into 'develop' Fixed tagged filesfix typoAdding compression to all VCF outputs from the SV-callersMerge branch 'feature-more_unit_tests' into 'develop' Style fixesAdded testMerge branch 'fix-gvcfs-extract' into 'develop' Added more testing to shivaFixed summary keysAdded tests for depsattempt to fix cyclic errorsby default report the SVtype in the ALT fieldenableRCtrimming is used to enable trimming of Reverse Complement versions of adaptersMove extension to biopet-extensionMerge remote-tracking branch 'remotes/origin/develop' into fix-svcallers-vcfStyle fixesFix samplenaming in breakdancerFixed summary statsFix samplename columnfix stuff that went wrong during mergeMerge branch 'develop' into fix-gvcfs-extractremove dummy codeStyle fixesMerge remote-tracking branch 'remotes/origin/develop' into biopet-biosMerge branch 'feature-disable_merging' into 'develop' Added init test on write depsAddec config option to disable merging of countfilesNo private mutableMerge remote-tracking branch 'remotes/origin/develop' into feature-more_unit_testsMerge branch 'fix-vcf_filter_test' into 'develop' Added input and output vcf to summaryFixed summaryAdd exclusions for specific values