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Created with Raphaël 2.2.014Mar1311109875432129Feb262524232221181716151211109875432129Jan28272625232221201918171514121110865430Dec292826252423222118171615141311Merge branch 'fix-bowtie2-indexfiles' into 'develop' add amplicon bed file documentationFix: Show a message for those plot, which were not created by FastQC. Some statistics cannot be collected by FastQC such as Kmer when the sequences are clean.Fixed unit testsRemove unused varFix bug when bowtie2 is not able to find reference files ending with .bt2l (new large file definition)Fixed value typeRaise default resourcesRaise default memory for VEPStyle fixesRemove commentAdded piping to freebayesAdding options to freebayesAdded output file to vepMerge branch 'fix-compile_issues' into 'develop' Fixed styleFixed compile issueMerge branch 'feature-small_rna' into 'develop' Merge with changes from developMerge branch 'fix-seqstat-arraysize' into 'develop' Style changeStyle changeMerge branch 'feature-Carp-docs-0.6.0' into 'develop' Fix typoFix typoAdding tests for seqstatMerge branch 'fix-logging' into 'develop' Fixed biopet loggingforgot , in the jsonlength array was too short for keeping the readlengths.Add yaml example and how to give multiple controls to one sampleMerge branch 'feature-mergesvcalls' into 'develop' Merge branch 'feature-toucan_summary' into 'develop' refactor docsrefactor in error messagerefactor to `configNamespace`Merge branch 'develop' into feature-small_rnaMerge branch 'fix-cutadapt' into 'develop' Merge branch 'feature-docs-0.6.0' into 'develop' Changed the cutadapt so the config will always load, even when fastqc data is no yet avilable