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Created with Raphaël 2.2.014Jan131210986517Dec1611985432128Nov272524222120191817141211108765432131Oct30292827252423222120171615141310987630Sep2926Fix for multiple tabs in contams fileAdded getFoundAdapters methodAdded scala docsAdded scala docsAdded scala docsRemove old scriptsSwitch to new toolMake prefix requiredAdded constructorRefactor config valuesAdded queue wrapperAdd tool to replace python scriptRemove old pipeline, new tool replace this functionUses a data provider for testGetValueFromMap methodAdd more scala docsRemove MockitoSugarAdd more functionalityCode optimizations and add getSamples methodFirst version of VcfStats tool for #93Added tool to executableFix sortingFirst version of toolAdd more loggingChange to fastq reader from htsjdkExtended sample handing in multisample qscriptAdded sample and library option to configRefactor getValueFromMap methodAdd test for default valueSmall optimizations after unit testsFix bug on freevarAdded unit tests to ConfigurableSmall optimizations after unit testingSwitch to optionsSwitch to case classAdded unit tests to configvalue classAdded unit tests at config classadded initial carp setupadded MACS2 wrappersRefactor getValueFromPathRename