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Created with Raphaël 2.2.07Mar5432129Feb262524232221181716151211109875432129Jan28272625232221201918171514121110865430Dec29282625242322211817161514131110764330Nov292726the whole shebang in one generatorAdded sample selector when fasta file can't be found in the configAuto style changesFixed tests on OSXMerge branch 'fix-vcffilter-extension-peter' into 'fix-vcffilter-extension' Merge branch 'fix-basecounter_executable' into 'develop' Merge branch 'fix-readgroup_check' into 'develop' Added check on no readgroupsAuto style fixesAdded basecounter to executableMerge branch 'feature-dustbin_report' into 'develop' Fixed javascriptFix insertsize report (missing sentence)Merge remote-tracking branch 'remotes/origin/develop' into feature-dustbin_reportMerge branch 'fix-gears_single_end' into 'develop' Auto style fixesAdded kraken plots to reportAuto style fixesFixed summaryAdded function dataprovidercontains ipv endswithgeneralize tests and use dataproviders.try to parse numeric values as numericadd test for vep statsAdded option to discard qualityRemove unneeded .getFixed file namefix code exampleMerge branch 'feature-docs-0.6.0' of git.lumc.nl:biopet/biopet into feature-docs-0.6.0summary documentationAdded header to bam fileFix for gears single end bam filestest vcf filter extensionFix Cutadapt statistics to store Long values. Tests hit the Int.maxMerge branch 'feature-skip_abort' into 'develop' Merge branch 'fix-278' into 'develop' Merge branch 'feature-vep_custom' into developUse List[_] instead of Option[_] for VEP's --custom flagdo not put header in resulting map agianmore spelling mistakes