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Created with Raphaël 2.2.011May1098765432130Apr29282726252221181615141312111087654131Mar3029252423211918171615141311109875432129Feb262524Added bedtools sorted flag as defaultAdded summary testAdded basic unit testsStyle fixFix cutadapt test.Merge branch 'develop' into fix-make-rc_trimmingoptionalUpdate testMerge branch 'develop' into fix-svcallers-vcfUse samplename_suffix to change the sample nameMerge branch 'develop' into feature-allow-custom-adaptersAdded summary jobsStyle fixesMake kopisu more modulairRemove empty classMerge remote-tracking branch 'remotes/origin/develop' into feature-cnvpipelineMerge branch 'fix-tagged_files' into 'develop' Fixed tagged filesfix typoAdding compression to all VCF outputs from the SV-callersMerge branch 'feature-more_unit_tests' into 'develop' Style fixesAdded testMerge branch 'fix-gvcfs-extract' into 'develop' Added more testing to shivaFixed summary keysAdded tests for depsattempt to fix cyclic errorsby default report the SVtype in the ALT fieldenableRCtrimming is used to enable trimming of Reverse Complement versions of adaptersMove extension to biopet-extensionMerge remote-tracking branch 'remotes/origin/develop' into fix-svcallers-vcfStyle fixesFix samplenaming in breakdancerFixed summary statsFix samplename columnfix stuff that went wrong during mergeMerge branch 'develop' into fix-gvcfs-extractremove dummy codeStyle fixesMerge remote-tracking branch 'remotes/origin/develop' into biopet-bios