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Created with Raphaël 2.2.01Dec28Nov272524222120191817141211108765432131Oct30292827252423222120171615141310987630Sep29262217161512111098532129Aug282726252220Seqstat ScalaAdded gubbins to the pipelineAdded getBipartitionsFile functionAdded workdirectoryAdded extension for gubbins scriptMerge branch 'feature-license' into 'develop'Merge branch 'develop' into feature-documentationChanges in docsAdded license bash scriptAdded protected licenseExclude public License from protected packageFix dirty build warningFix for #90Update GSNAP version capture testUpdate htseq-count version capture testUpdate main pipeline for compatibility with new base classMigrate to new project layoutMerge branch 'develop' into feature-gentrapchanges in docsFixing names of variables and apply sambamba markduplicates on the merged bam of yamsvpFix for #91Merge branch 'develop' into feature-licenseadded licence optionrename filelicense template for file headersAdd link to licenseAdded license-maven-pluginChange licenseMigrate to new project layoutMerge branch 'develop' into feature-fastq_syncMerge new framework setup into feature branchMerge branch 'develop' of git.lumc.nl:biopet/biopet into feature-yamsvpUpdate IntelliJ filesMerge branch 'feature-licence' into 'develop'Fix on git hash pluginadded docsadded docsmove git filesRemove unused filesremove mvn script, need compiling Queue/Gatk from source