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Created with Raphaël 2.2.04May32130Apr29282726252221181615141312111087654131Mar3029252423211918171615141311109875432129Feb26252423222118171615121110Moved files to correct placeMerge remote-tracking branch 'remotes/origin/develop' into biopet-biosAdded fake exeMoved filesMerge branch 'docs-Bios' into 'feature-bios_base_counts' Merge remote-tracking branch 'remotes/origin/develop' into fix-vcf_filter_testMerge remote-tracking branch 'remotes/origin/develop' into toucan-groupsMerge remote-tracking branch 'remotes/origin/develop' into feature-scatter_annotationMerge branch 'feature-queue_licence' into 'develop' Change name of main objectAdded allele index to depsCorrect importsAdd deprication tagRemove old licence from headerFixed graph issueFixed outputFiles of fifo pipeFixed unit testsAdd documentation about BIOS countsMove scatter functions to biopet extensionsFix graph errorFixed scatteringUpdate readmeFixed compile errorRemoved gears.jsFix output file of indexremoved testFixed mutable mapRemove unexisting repositoryRemove external maven repositorymerged developMerge branch 'develop' into toucan-groupsadd docs for groupsextra tests for toucangive toucan outputvcf var for programmatic access.Merge branch 'develop' into feature-cnvpipelineMerge branch 'develop' into feature-cutadapt-adapterreportingFixed default valueMerge branch 'develop' into feature-allow-custom-adaptersFixed graph issuesFixed config key