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Created with Raphaël 2.2.029Nov2827262524232221201918171614111098754231Oct282726252421171413121110654329Sep2827262221201917161513102131Aug2625242322211817151110954129Jul28262522212019141387654129Jun2827242120171514131087632131May30292726252423201918171514Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-425Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-374Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-477Adding option to extensionAdding refcallsRename filesFix Null pointer Exceptionnewlinefix more argumentsfix a few argumentsMerge branch 'fix-BIOPET-473' into 'develop' Added docsMerge branch 'fix-BIOPET-415' into 'develop' Merge branch 'fix_BIOPET-464' into 'develop' autostyle changesSwitch from dot to gv filesAdding dot files to log folderAdded a jobs fileSimplify output fileFix compile errorAdded compress methodAdded main flag to most main jobsAdding main job to deps.jsonEnable deps files alwaysFixed unit testFixed pathFixing BIOPET-473Fix typoAdded yaml support to tsv parserAdded map to yaml methodsAdded more quality flagstatsFixing bug on empty count fileput bed conversion in kopisu methodwrapper for xcnv to bedFixed field namesclose writerwrite xcnv to bed toolRemove unused importsFixed typofix BIOPET-415