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Created with Raphaël 2.2.019Aug1817161514131211643130Jul28272423222117167632130Jun292827262524232221191716151098765432129May28272619181413121110974130Apr2928232016151413121098764230Mar2726252423Changed order of inputChanged default max threadsAdded loggingRemove env valueFix star output filesfixed bowtie commandMerge branch 'feature-improve_sample_tsv' into 'develop' Fixed typoFixed typoAdded basic version of toolchanges in docsMerge branch 'feature-fast_build' into 'develop' Template for new toolChanged default mode for VepNormalizerFix indexes location of bowtieFix tophat configFix output fileMerge branch 'fix-mapping_report' into 'develop' Fix inversionRaise memory requirements for gmap_buildStyle fixAdded reference trait for tophatAdded reference trait for tophatFix output fileChanges ; to &&, is saverfixed output dir of starChanged output filesRaise memory for bwa indexAdded tophat to configAdded starFixid output filesAdded requirements to docsAdding md5sum checkingAdding simple input files checksAdding workaround for issue #180Added an exeption when lines has not the same columns as the headerAdded exeption on duplicate sample/libsSwitched library to an Option[String]Fix output dirSkipping parts of report when they are skipped in the pipeline