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Created with Raphaël 2.2.017Feb1615141312111096543230Jan292827262322212019161514131210986517Dec1611985432128Nov272524222120191817Added output FilesAdd new summary to seqstatAdd initial wrapper for bedtools groupbyAdded new summary jobsAdded new summary to fastqsyncAdded new summary to cutadeptAdded plots to outputFilesMerge branch 'develop' of git.lumc.nl:biopet/biopet into feature-cnvpipelineFix typoMake nulls explicit in Bedtools extensionsConverted fastqc to new summaryFix typoAdded hidden out fileAdd summary framework to CarpAdded summariesChange to spaces4Merge branch 'develop' into feature-summaryAdded summary framework to mapping and flexiprepFix memory issuesAdded qscripts to final output fileAdded qscript wide summary jobsRemove unused apply methodsFix outputDirsAdded default vmem and add log.file as output fileFix on index ln methodsFix output dirsRemove obselete apply methodsFix output dirs and set default single sample calling offFix outputDirsAdded SampleLibraryTagExclude the target from git in bam2wigRemove variable IDE filesRemoving comments and stale fileAdding Seqstat to the pipeline testsMerge branch 'develop' of git.lumc.nl:biopet/biopet into feature-seqstat-scalaSeqstat in FlexiprepMerge branch 'develop' into feature-gentrapMerge branch 'patch_develop_defaultvmem' into 'develop'Patch for FastqsyncMerge branch 'patch-pipelines_test' into 'develop'