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Created with Raphaël 2.2.012Feb11109875432129Jan28272625232221201918171514121110865430Dec29282625242322211817161514131110764330Nov29272625242320191817161211109876543231Oct3029Merge branch 'fix-merge_issues' into 'develop' Fix typoSimplyfy additional sectionsFix file nameFix typoRephrase .. and typo fixTypo fixForgot adding the smallRNA countingMerge branch 'fix-bug-vcffilter' into 'develop' Forgot the key for StrandSpecificity.SECOND_READ_TRANSCRIPTION_STRAND.toStringAdd pipeline unittest (integration test)Set strandspecifity for CollectRNAseqMetricsUpdate TinyCap with Gentrap Measures and fixes some typos in the measures (from the merge)Merge from developMerge branch 'feature-measure_modules' into 'develop' Change some wordings..fix #273Fix code warningsMoved Rscript fileReplace upac symbols in mpileupRemove duplicated fileA bit on the tested setups / protocolsAdded scala docs to multisampleMappingMerge branch 'develop' into feature-small_rnaMerge remote-tracking branch 'remotes/origin/develop' into feature-measure_modulesMerge branch 'fix-272' into 'develop' Fix prefix of variantcallingMake inverse of the boolean to fix issue #272ReformattingMerge branch 'fix-268' into 'develop' More introduction for documentationRaise memory of varscanAdd comments to explain what the filter doesRemove unused importsAdded extra check for forcing abolute paths for input filesFilter out the 'No hit' sequencesSetup the documentation for tinycapReduce rereading of the statsFile from fastqcfixed merge table jobMerge with develop
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