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Created with Raphaël 2.2.010Mar98765432127Feb26242319181716151413121110965Fix wrong threads setting in TopHat wrapperFix wrong threads setting in GSNAP wrapperMerge branch 'feature-test_coverage' into 'develop'Update wrong output file namesUpdate unit test for GentrapFix errors caused by mergingMerge branch 'patch-toucan' into 'develop'Report updateMerge from develop, edit yamsvp to use multisample and summaryMerge branch 'develop' into feature-gentrapFormatting updatesFix wrong parent for Basty in the pom.xml fileRemove user configKopisu - FreeC only]Fix output directory path in ToucanFinish overview and multi sample sectionUpdate heatmap plotting scriptUpdate gentrap summary and statsFix wrong quote usageMerge branch 'feature-shiva' into 'develop'Merge branch 'feature-rcommandline' into 'develop'Fix on intermeditaite filesMerge branch 'develop' into feature-shivaRCommandlineFunction TraitRCommandlineFunction TraitAdd Tophat to Mapping moduleAdd functional Tophat wrapperMerge branch 'patch-mapping' into 'develop'Fix error on zipped input without flexiprepAdd initial version table to reportForce version retrieval and path resolution in CustomVarscanMerge branch 'develop' into feature-gentrapMerge branches 'develop' and 'docs_v.0.3.0' of git.lumc.nl:biopet/biopet into docs_v.0.3.0Merge branch 'patch-summary_versions' into 'develop'Merge branch 'patch-seqstat' into 'develop'More efficient codeMore efficient case classFix array out of bound errorFix 'n' bug for seqstatFix Some(versions)