Skip to content
Snippets Groups Projects

Repository graph

You can move around the graph by using the arrow keys.
Select Git revision
  • biopet-bios
  • develop
  • epic-BIOPET-669
  • example-tarextract
  • fix-BIOPET-245
  • fix-BIOPET-593
  • fix-BIOPET-724
  • fix-BIOPET-728
  • fix-BIOPET-730
  • fix-BIOPET-782
  • gonl-GRCh38
  • master default
  • v0.9.0
  • v0.8.0
  • BIOS
  • v0.7.0
  • v0.6.0
  • v0.5.0
  • v0.4.0
  • v0.4.0-RC2
  • v0.4.0-RC1
  • v0.3.2
  • v0.3.1
  • v0.3.0
  • v0.2.0
  • start-feature-branching
  • v0.1.4
  • v0.1.2
  • v0.1.1
  • v0.1.0
  • 0.1.0
31 results
Created with Raphaël 2.2.019Jan18171514121110865430Dec29282625242322211817161514131110764330Nov29272625242320191817161211109876543231Oct30292827262523222120191615141312987Remove pindel from the list of default callersFixed unit testsAdded varscan_jar to test configRaise default memory for varscanAdded version to varscanAdded version to varscanFixed error message in bamutilsFixed styleMerge branch 'feature-update-cutadapt' into 'develop' add varscan test to shiva variantcalling testmove varscan wrapper to extensionsUpdate Cutadapt wrapper and style change (camelCaps instead of _)Update Cutadapt wrapperchanges to get rid of reference callsRefactor styledelete file name file on exit of pipelinechange sample name in varscan vcfremove function removeEmptyPile()Pindel outputpath fix.added fix mpileup.py scripts to scripts dir in shivaadded fixmpileup script and removeEmptypile functionMerge branch 'feature-core_unit_tests' into 'develop' Merge branch 'fix-renames' into 'develop' Rename camel caps to underscoreUnify output bam namesbgzip piping went wrong fix with if stdout else >Fix output path for pindel (pindel outputs to certain dir with prefix_)generate dir for varscanFix output path for pindel (pindel outputs to certain dir with prefix_)Our option couln't be -l (due to biopet debug flag)add varscan to shiva variantcallersChanged defaults and fix the pindelconfig script.Added test to summary coreFix major error, things in beforeCmd was intended to do in beforeGraphFix pindel caller (fixing null error with Option[File] = None instead of _)Fix input of bams to svcalling tools..Adding empty summary testOptimize importsAdding tests for input files for summaryAdd test addSummarizable