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Created with Raphaël 2.2.06Jul54129Jun2827242120171514131087632131May302927262524232019181715141312111098765432130Apr29282726252221181615141312111087654Created a help page for BaseCounter. It is incompleteAdded text in the options parserImprove documentation for AnnotateVcfWithBedAdded scala docsRemove unused importsFixed operatorMerge branch 'fix_mapping_summary' into 'develop' Style changesAdded clipping statsimproved futures collectingAdded base version of quality and insertsize histogramCreate a documentation for AnnotateVcfWithBedMade a future based toolposible to get list from dict nowAdded a stats class for bamstatsImprove user documentation for the toolInclude AnnotateVcfWithBedmd in mkdocs.ymlCreate mocumentation for Annotate VcfWithBedChange argumnet description for ToolCommandMerge branch 'fix-gentrap_test_runtime' into 'develop' Merge branch 'fix-insertsize_single_end' into 'develop' Remove insertsize tag from summary when not executedChange argumnet descriptionFix picard tool usage Code. Replace JSON with YAML examplesFix typoUpdated and added some release notes relevant to mention for v0.7.0Fixed testFixed gtf outputFixed output file argFormat fixesRemove fragment per exonAdded variantcalling and summary testingFixing failing testsStyle fixesMerge remote-tracking branch 'remotes/origin/develop' into feature-gentrap_docsAdded extra documentationMerge branch 'feature-pipeline-example' into 'develop' Reducing number of tests in gentrapAdded file to menuremove TODO