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Created with Raphaël 2.2.017Sep161413111098765432131Aug3029282726252423222120191817161514131211643130Jul28272423222117167632130Jun29282726252423222119171615109Fix plots for library levelFix sample bamMetricsFix LinePlotFix pom.xmlMerge remote-tracking branch 'origin/develop' into feature-generate_indexesMerge remote-tracking branch 'origin/develop' into feature-input_files_checkingMerge remote-tracking branch 'origin/develop' into feature-fixed_valuesSwitch example to BiopetCoreMerge remote-tracking branch 'origin/develop' into feature-external_examplesMerge remote-tracking branch 'origin/develop' into feature-pipeableFixed importMerge remote-tracking branch 'origin/develop' into feature-gatk_et_optionMerge branch 'feature-split_modules' into 'develop' Change logger messageRemove $ from classFix Report builderFix tool extensionsFix tool extendsionsFixed dependencyFix unit teststyle changesMerge branch 'develop' into feature-pipeableFix dependency issuestyle changesAdded a tool packageRemove framework filesChange versions to varMoved extensions to new moduleMove scripts to bammetricsHide log for tool testsFix pipeline without frameworkDelete duplicate resourcesMoved to other packageFix compile errorsRscript usable without core nowMove abstract commandlines function for Rscript and PythonMove test resourcesTools split into new modules, core and utils are compileable nowMoved core sourcesMove utils tests to utils