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biopet.biopet
Graph
1368991155faff3933bb9610797a413e1fa92fdf
Select Git revision
Branches
12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
default
Tags
19
v0.9.0
v0.8.0
BIOS
v0.7.0
v0.6.0
v0.5.0
v0.4.0
v0.4.0-RC2
v0.4.0-RC1
v0.3.2
v0.3.1
v0.3.0
v0.2.0
start-feature-branching
v0.1.4
v0.1.2
v0.1.1
v0.1.0
0.1.0
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Raise memory
Adding Gears to summary output of Mapping
Optimize code
Added input file checking
fixed dependencies foe summary
Simplify unmapped reads extraction
Merge Request accepted by jenkins build success
blah
see #231
Style fixes
Fixed intermediate files
Fix resource copy for the report
Fix fai check
Fixed summary file name
Added reference to bamMetrics
Merge remote-tracking branch 'remotes/origin/develop' into fix-shiva_fails
Changed error handeling
Version cleanup, point all to version 0.5.0
Added bammetrics when start from bam file
Hide QC from report when flexiprep is not executed
change pipeline test, not test on sambambaview, but on samtoolsview
More style fixes
Merge branch 'develop' of git.lumc.nl:biopet/biopet into feature-gears
Style change
Remove sambamba and use samtools for extracting pairs of unmapped reads (not the advanced query)
Style fixes and config for samtofastq
Fixed link to bai file
Fixed library key
No memory increase on first retry
Added a merge step
Fixed sample settings
Added args
Fixed md5 check
Adding Scaladocs to KrakenReportToJson and remove redundant code
Style change
Refactor the report generation a bit. Move pipeline specific report components into the pipeline itself (not hosted in core anymore)
Merge branch 'fix-coverage_piping' into 'develop'
Fixes for the comments made in the ticket #241
Fixed report
Quick fix, error in the HelloPipeline
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