Skip to content
Snippets Groups Projects
Select Git revision
  • biopet-bios
  • develop
  • epic-BIOPET-669
  • example-tarextract
  • fix-BIOPET-245
  • fix-BIOPET-593
  • fix-BIOPET-724
  • fix-BIOPET-728
  • fix-BIOPET-730
  • fix-BIOPET-782
  • gonl-GRCh38
  • master default
  • v0.9.0
  • v0.8.0
  • BIOS
  • v0.7.0
  • v0.6.0
  • v0.5.0
  • v0.4.0
  • v0.4.0-RC2
  • v0.4.0-RC1
  • v0.3.2
  • v0.3.1
  • v0.3.0
  • v0.2.0
  • start-feature-branching
  • v0.1.4
  • v0.1.2
  • v0.1.1
  • v0.1.0
  • 0.1.0
31 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.030Oct292827262523222120191615141312987652130Sep29282725242322211817161413111098765432131Aug3029282726252423222120191817Raise memoryAdding Gears to summary output of MappingOptimize codeAdded input file checkingfixed dependencies foe summarySimplify unmapped reads extractionMerge Request accepted by jenkins build successblahsee #231Style fixesFixed intermediate filesFix resource copy for the reportFix fai checkFixed summary file nameAdded reference to bamMetricsMerge remote-tracking branch 'remotes/origin/develop' into fix-shiva_failsChanged error handelingVersion cleanup, point all to version 0.5.0Added bammetrics when start from bam fileHide QC from report when flexiprep is not executedchange pipeline test, not test on sambambaview, but on samtoolsviewMore style fixesMerge branch 'develop' of git.lumc.nl:biopet/biopet into feature-gearsStyle changeRemove sambamba and use samtools for extracting pairs of unmapped reads (not the advanced query)Style fixes and config for samtofastqFixed link to bai fileFixed library keyNo memory increase on first retryAdded a merge stepFixed sample settingsAdded argsFixed md5 checkAdding Scaladocs to KrakenReportToJson and remove redundant codeStyle changeRefactor the report generation a bit. Move pipeline specific report components into the pipeline itself (not hosted in core anymore)Merge branch 'fix-coverage_piping' into 'develop' Fixes for the comments made in the ticket #241Fixed reportQuick fix, error in the HelloPipeline