Skip to content
Snippets Groups Projects
Select Git revision
  • biopet-bios
  • develop
  • epic-BIOPET-669
  • example-tarextract
  • fix-BIOPET-245
  • fix-BIOPET-593
  • fix-BIOPET-724
  • fix-BIOPET-728
  • fix-BIOPET-730
  • fix-BIOPET-782
  • gonl-GRCh38
  • master default
  • v0.9.0
  • v0.8.0
  • BIOS
  • v0.7.0
  • v0.6.0
  • v0.5.0
  • v0.4.0
  • v0.4.0-RC2
  • v0.4.0-RC1
  • v0.3.2
  • v0.3.1
  • v0.3.0
  • v0.2.0
  • start-feature-branching
  • v0.1.4
  • v0.1.2
  • v0.1.1
  • v0.1.0
  • 0.1.0
31 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.022Oct2120191615141312987652130Sep29282725242322211817161413111098765432131Aug30292827262524232221201918171615141312116431Sync with develop changesMerge with developSmall fixes in reportMerge branch 'develop' of git.lumc.nl:biopet/biopet into feature-docs-0.5.0Merge branch 'fix-typo-toolcommandfuntion' into 'develop' Adding examples for developers creating pipeline, tool, wrapper and reports.Fix typo of trait class ToolCommandFuntion -> ToolCommandFunction #221Fix markup in codeChange to compressed outputFix sample and library flagchanged importsMerge branch 'fix-flexiprep_noext' into 'develop' Fix build issuesFix unit testingMore piping for target flagstatUse normal pipes instead of fifo pipesMerge remote-tracking branch 'remotes/origin/develop' into fix-coverage_pipingRemove fixmeAdded piping support to coverage scriptFix flagMerge branch 'feature-sample_name_check' into 'develop' Changed error messagechange regexadded bcftools singlesample to the test of publicMoved function to utils, this might be usefull in other pipelinesMerge branch 'fix-versions' into 'develop' Report updateadded bcftools singlesample to the testAdding report sections and the sunburst plot. Fixed the reporting of gears output files.Adjusting the Sambamba view filter, exclude "split reads" in RNA-seq experimentsadded dependency for combinevariantsMerge branch 'develop' of git.lumc.nl:biopet/biopet into feature-gearsStyle update by IDEAUpdated krakentojson report and enforce check-names with-in KrakenUse provided exts Set instead of zipExtensionsRemove R1_ext and R2_ext from FlexiprepHandle RNA seq files, sam filter only takes the primary alignmentAdd error message when a Flexiprep input file does not have the expected structureRefactor filename and extension retrieval in Flexiprepadd bcf merge to shiva and create wrapper