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Created with Raphaël 2.2.02May130Apr29282726252221181615141312111087654131Mar3029252423211918171615141311109875432129Feb2625242322211817161512111098Update readmeFixed compile errorRemoved gears.jsFix output file of indexremoved testFixed mutable mapRemove unexisting repositoryRemove external maven repositorymerged developMerge branch 'develop' into toucan-groupsadd docs for groupsextra tests for toucangive toucan outputvcf var for programmatic access.Merge branch 'develop' into feature-cnvpipelineMerge branch 'develop' into feature-cutadapt-adapterreportingFixed default valueMerge branch 'develop' into feature-allow-custom-adaptersFixed graph issuesFixed config keyFixed argFixed mapping reportFixed name of module (again ...)Fixed name of module (again ...)Fixed name of moduleFixed pomChange name of moduleMerge branch 'develop' into fix-svcallers-vcfstyle fixesReduced number of test in shivaStyle fixesFixed testsMerge branch 'develop' into feature-bios_base_countsReduce number of testsFixed reportAdded varscan fake jarFixed testUsage of a filteredSet (applying mappability track)Updated test definition and add little comment what the code does.Added aggregate step againFix tinycap dir